Package: TR8 0.9.22
TR8: A Tool for Downloading Functional Traits Data for Plant Species
Plant ecologists often need to collect "traits" data about plant species which are often scattered among various databases: TR8 contains a set of tools which take care of automatically retrieving some of those functional traits data for plant species from publicly available databases (Biolflor, The Ecological Flora of the British Isles, LEDA traitbase, Ellenberg values for Italian Flora, Mycorrhizal intensity databases, Catminat, BROT, PLANTS, Jepson Flora Project). The TR8 name, inspired by "car plates" jokes, was chosen since it both reminds of the main object of the package and is extremely short to type.
Authors:
TR8_0.9.22.tar.gz
TR8_0.9.22.zip(r-4.5)TR8_0.9.22.zip(r-4.4)TR8_0.9.22.zip(r-4.3)
TR8_0.9.22.tgz(r-4.4-any)TR8_0.9.22.tgz(r-4.3-any)
TR8_0.9.22.tar.gz(r-4.5-noble)TR8_0.9.22.tar.gz(r-4.4-noble)
TR8_0.9.22.tgz(r-4.4-emscripten)TR8_0.9.22.tgz(r-4.3-emscripten)
TR8.pdf |TR8.html✨
TR8/json (API)
NEWS
| # Install 'TR8' in R: |
| install.packages('TR8', repos = c('https://giobo.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/giobo/tr8/issues
- available_tr8 - A dataframe containing the traits available for download.
- biolflor_lookup - Biolflor_lookup
- column_list - Column_list
- imkerbond_check - Set of plant species names to be corrected.
- leda_lookup - List with reference variables needed to download traits from LEDA Traitbase
- list_of_traits_Biolflor - List_of_traits_Biolflor
- pignatti - Pignatti
- ref_PLANTS - Ref_PLANTS
- traits_eco - Set of functional traits to be retrieved by Ecoflora.
- traits_pollen_Biolflor - Traits_pollen_Biolflor
- traits_special_Biolflor - Traits_special_Biolflor
Last updated 2 years agofrom:10ab03648e. Checks:OK: 1 NOTE: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Aug 23 2024 |
| R-4.5-win | NOTE | Aug 23 2024 |
| R-4.5-linux | NOTE | Aug 23 2024 |
| R-4.4-win | NOTE | Aug 23 2024 |
| R-4.4-mac | NOTE | Aug 23 2024 |
| R-4.3-win | NOTE | Aug 23 2024 |
| R-4.3-mac | NOTE | Aug 23 2024 |
Exports:available_traitsbibextract_traitsissueslookuptr8tr8_setup
Dependencies:apeaskpassassertthatbackportsbase64encbitbit64bitopsboldbslibcachemcellrangercheckmateclicliprclustercodetoolscolorspacecommonmarkconditionzcpp11crayoncrulcurldata.tabledigestdplyrevaluatefansifarverfastmapfastmatchfontawesomeforeachforeignFormulafsgenericsggplot2gluegridExtragtablehighrHmischmshtmlTablehtmltoolshtmlwidgetshttpcodehttpuvhttrigraphisobanditeratorsjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclemagrittrMASSMatrixmemoisemgcvmimemunsellnatservnlmennetopensslpbapplyphangornpillarpkgconfigplyrprettyunitsprogresspromisespurrrquadprogR6rappdirsratelimitrRColorBrewerRcppRCurlreadrreadxlrematchrentrezreshaperexritisrlangrmarkdownrnclrotlrpartrredlistrstudioapisassscalesshinysolriumsourcetoolsstringistringrsystaxizetibbletidyselecttinytextriebeardtzdburltoolsutf8uuidvctrsviridisviridisLitevroomWikidataQueryServiceRWikidataRWikipediRwikitaxawithrworrmsxfunXMLxml2xtableyamlzoo
A real life workflow for the TR8 package
Rendered fromTR8_workflow.Rnwusingutils::Sweaveon Aug 23 2024.Last update: 2019-02-11
Started: 2014-10-26
Plants traits data
Rendered fromExpanding_TR8.Rnwusingutils::Sweaveon Aug 23 2024.Last update: 2014-11-21
Started: 2014-10-26
TR8: Extract traits data for plant species
Rendered fromTR8.Rnwusingutils::Sweaveon Aug 23 2024.Last update: 2020-11-30
Started: 2014-10-02
